PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10317.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 270aa    MW: 30403.8 Da    PI: 5.1729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10317.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-1977127155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  Rsa1.0_10317.1_g00001.1  77 CSYRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAALAYDEAARVMYG 127
                              67*****998.**********8...3.35**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1477127IPR001471AP2/ERF domain
CDDcd000187.30E-3177136No hitNo description
PROSITE profilePS5103222.49778136IPR001471AP2/ERF domain
SMARTSM003804.7E-3878142IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2078137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-3178137IPR001471AP2/ERF domain
PRINTSPR003671.5E-107990IPR001471AP2/ERF domain
PRINTSPR003671.5E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAVYDHNGDI NSTQLDTSRK RKSRSRRDGT TVAERLQVWK EYNDNIEEAS PKKRKVPAKG  60
SKKGCMKGKG GPENSRCSYR GVRQRIWGKW VAEIREPNRG SRLWLGTFPT AEEAALAYDE  120
AARVMYGPSV ARLNFPQKSV SDVISTSSQS EVCTAGTSGR VHVKTEDADC DSEPFLGFLG  180
EANPLENGVG EIKNDVKVDA PSADWLGEFE QKYWSEVLEE KEKQKQKQKK QVETCEKQPD  240
SLSVADYGWP EDLDQTQWDP SEMFDVSELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1779136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896311e-142AC189631.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003K07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676147.11e-133PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotO821321e-122DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D3AHW21e-130A0A0D3AHW2_BRAOL; Uncharacterized protein
STRINGAT5G05410.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-90DRE-binding protein 2A